IL_6D9J_301

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAGGUGG*UGUUACAGCC

Length

19 nucleotides

Bulged bases

6D9J|1|5|G|748, 6D9J|1|5|C|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|744
6D9J|1|5|G|745
6D9J|1|5|A|746
6D9J|1|5|A|747
6D9J|1|5|G|748
6D9J|1|5|G|749
6D9J|1|5|U|750
6D9J|1|5|G|751
6D9J|1|5|G|752
*
6D9J|1|5|U|911
6D9J|1|5|G|912
6D9J|1|5|U|913
6D9J|1|5|U|914
6D9J|1|5|A|915
6D9J|1|5|C|916
6D9J|1|5|A|917
6D9J|1|5|G|918
6D9J|1|5|C|919
6D9J|1|5|C|920

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

eL14

Chain S

eL20