IL_6D9J_312

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAGAAG*CCCUUGAAAAUCCG

Length

22 nucleotides

Bulged bases

6D9J|1|5|C|2739, 6D9J|1|5|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|2595
6D9J|1|5|G|2596
6D9J|1|5|G|2597
6D9J|1|5|A|2598
6D9J|1|5|G|2599
6D9J|1|5|A|2600
6D9J|1|5|A|2601
6D9J|1|5|G|2602
*
6D9J|1|5|C|2737
6D9J|1|5|C|2738
6D9J|1|5|C|2739
6D9J|1|5|U|2740
6D9J|1|5|U|2741
6D9J|1|5|G|2742
6D9J|1|5|A|2743
6D9J|1|5|A|2744
6D9J|1|5|A|2745
6D9J|1|5|A|2746
6D9J|1|5|U|2747
6D9J|1|5|C|2748
6D9J|1|5|C|2749
6D9J|1|5|G|2750

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

eL43