IL_6D9J_315
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 6D9J|1|5|G|3839
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_315 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.2692
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
6D9J|1|5|G|2847
6D9J|1|5|G|2848
6D9J|1|5|A|2849
6D9J|1|5|A|2850
6D9J|1|5|G|2851
6D9J|1|5|U|2852
6D9J|1|5|C|2853
6D9J|1|5|G|2854
6D9J|1|5|G|2855
*
6D9J|1|5|C|3837
6D9J|1|5|U|3838
6D9J|1|5|G|3839
6D9J|1|5|U|3840
6D9J|1|5|C|3841
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain V
- uL14
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