3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCUC*GAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_316 not in the Motif Atlas
Geometric match to IL_1MFQ_004
Geometric discrepancy: 0.2115
The information below is about IL_1MFQ_004
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
39

Unit IDs

6D9J|1|5|G|2889
6D9J|1|5|C|2890
6D9J|1|5|U|2891
6D9J|1|5|C|2892
*
6D9J|1|5|G|3609
6D9J|1|5|A|3610
6D9J|1|5|A|3611
6D9J|1|5|C|3612

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain JJ
eS8
Chain R
eL19

Coloring options:


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