IL_6D9J_318

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGA*UACCA

Length

8 nucleotides

Bulged bases

6D9J|1|5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|U|3915
6D9J|1|5|G|3916
6D9J|1|5|A|3917
*
6D9J|1|5|U|4384
6D9J|1|5|A|4385
6D9J|1|5|C|4386
6D9J|1|5|C|4387
6D9J|1|5|A|4388

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2