3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGGUGUAGAA*UACCACUACU
Length
20 nucleotides
Bulged bases
6D9J|1|5|U|3957, 6D9J|1|5|C|4052, 6D9J|1|5|A|4053
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6D9J|1|5|A|3954
6D9J|1|5|G|3955
6D9J|1|5|G|3956
6D9J|1|5|U|3957
6D9J|1|5|G|3958
6D9J|1|5|U|3959
6D9J|1|5|A|3960
6D9J|1|5|G|3961
6D9J|1|5|A|3962
6D9J|1|5|A|3963
*
6D9J|1|5|U|4049
6D9J|1|5|A|4050
6D9J|1|5|C|4051
6D9J|1|5|C|4052
6D9J|1|5|A|4053
6D9J|1|5|C|4054
6D9J|1|5|U|4055
6D9J|1|5|A|4056
6D9J|1|5|C|4057
6D9J|1|5|U|4058

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 4
Cripavirus internal ribosome entry site (IRES); CrPV IRES
Chain K
uL1

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1316 s