IL_6D9J_321
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAAGUGGGAG*CGCCGGUGAAU
- Length
- 22 nucleotides
- Bulged bases
- 6D9J|1|5|U|3964, 6D9J|1|5|U|3968
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|A|3963
6D9J|1|5|U|3964
6D9J|1|5|A|3965
6D9J|1|5|A|3966
6D9J|1|5|G|3967
6D9J|1|5|U|3968
6D9J|1|5|G|3969
6D9J|1|5|G|3970
6D9J|1|5|G|3971
6D9J|1|5|A|3972
6D9J|1|5|G|3973
*
6D9J|1|5|C|4038
6D9J|1|5|G|4039
6D9J|1|5|C|4040
6D9J|1|5|C|4041
6D9J|1|5|G|4042
6D9J|1|5|G|4043
6D9J|1|5|U|4044
6D9J|1|5|G|4045
6D9J|1|5|A|4047
6D9J|1|5|A|4048
6D9J|1|5|U|4049
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 4
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain K
- uL1
Coloring options: