3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAUUG*CCAAGCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6D9J|1|5|C|4466
6D9J|1|5|A|4467
6D9J|1|5|U|4468
6D9J|1|5|U|4469
6D9J|1|5|G|4470
*
6D9J|1|5|C|4485
6D9J|1|5|C|4486
6D9J|1|5|A|4487
6D9J|1|5|A|4488
6D9J|1|5|G|4489
6D9J|1|5|C|4490
6D9J|1|5|G|4491

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
uL3
Chain H
uL6
Chain V
uL14
Chain m
eL40

Coloring options:

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