IL_6D9J_331

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGC*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_331 not in the Motif Atlas

Homologous match to IL_4WF9_110

Geometric discrepancy: 0.5316

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6D9J|1|7|C|6
6D9J|1|7|G|7
6D9J|1|7|G|8
6D9J|1|7|C|9
*
6D9J|1|7|G|110
6D9J|1|7|C|111
6D9J|1|7|U|112
6D9J|1|7|G|113

Current chains

Chain 7

5S rRNA

Nearby chains

Chain D

uL18

Chain J

uL11

Chain T

eL21