IL_6D9J_333
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACU*GGAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_333 not in the Motif Atlas
- Geometric match to IL_6DME_002
- Geometric discrepancy: 0.2606
- The information below is about IL_6DME_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_36516.3
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
6D9J|1|2|A|802
6D9J|1|2|C|803
6D9J|1|2|U|804
*
6D9J|1|2|G|859
6D9J|1|2|G|860
6D9J|1|2|A|861
6D9J|1|2|A|862
6D9J|1|2|U|863
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain FF
- eS4
- Chain II
- eS7
- Chain MM
- uS17
- Chain XX
- uS8
Coloring options: