IL_6D9J_336
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGGUUCGAAG*CGUAGUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|2|A|1042
6D9J|1|2|G|1043
6D9J|1|2|G|1044
6D9J|1|2|U|1045
6D9J|1|2|U|1046
6D9J|1|2|C|1047
6D9J|1|2|G|1048
6D9J|1|2|A|1049
6D9J|1|2|A|1050
6D9J|1|2|G|1051
*
6D9J|1|2|C|1067
6D9J|1|2|G|1068
6D9J|1|2|U|1069
6D9J|1|2|A|1070
6D9J|1|2|G|1071
6D9J|1|2|U|1072
6D9J|1|2|U|1073
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- uL2
- Chain PP
- uS11
- Chain bb
- eS26
Coloring options: