3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGGUUCGAAG*CGUAGUU
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6D9J|1|2|A|1042
6D9J|1|2|G|1043
6D9J|1|2|G|1044
6D9J|1|2|U|1045
6D9J|1|2|U|1046
6D9J|1|2|C|1047
6D9J|1|2|G|1048
6D9J|1|2|A|1049
6D9J|1|2|A|1050
6D9J|1|2|G|1051
*
6D9J|1|2|C|1067
6D9J|1|2|G|1068
6D9J|1|2|U|1069
6D9J|1|2|A|1070
6D9J|1|2|G|1071
6D9J|1|2|U|1072
6D9J|1|2|U|1073

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain A
uL2
Chain PP
uS11
Chain bb
eS26

Coloring options:

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