IL_6D9J_340
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAAUUU*AUUAGUCA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_340 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.2648
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6D9J|1|5|U|31
6D9J|1|5|G|32
6D9J|1|5|A|33
6D9J|1|5|A|34
6D9J|1|5|U|35
6D9J|1|5|U|36
6D9J|1|5|U|37
*
6D9J|1|5|A|44
6D9J|1|5|U|45
6D9J|1|5|U|46
6D9J|1|5|A|47
6D9J|1|5|G|48
6D9J|1|5|U|49
6D9J|1|5|C|50
6D9J|1|5|A|51
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain j
- eL37
- Chain o
- eL42
Coloring options: