IL_6D9J_341

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUCC*GCCCG

Length

11 nucleotides

Bulged bases

6D9J|1|5|U|171, 6D9J|1|5|C|172, 6D9J|1|5|C|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|C|168
6D9J|1|5|A|169
6D9J|1|5|C|170
6D9J|1|5|U|171
6D9J|1|5|C|172
6D9J|1|5|C|173
*
6D9J|1|5|G|263
6D9J|1|5|C|264
6D9J|1|5|C|265
6D9J|1|5|C|266
6D9J|1|5|G|267

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain h

eL35