IL_6D9J_354

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAACGGGG*CCCUCUCGCC

Length

20 nucleotides

Bulged bases

6D9J|1|5|C|4895, 6D9J|1|5|C|4921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|4890
6D9J|1|5|G|4891
6D9J|1|5|A|4892
6D9J|1|5|A|4893
6D9J|1|5|A|4894
6D9J|1|5|C|4895
6D9J|1|5|G|4896
6D9J|1|5|G|4897
6D9J|1|5|G|4898
6D9J|1|5|G|4899
*
6D9J|1|5|C|4920
6D9J|1|5|C|4921
6D9J|1|5|C|4922
6D9J|1|5|U|4923
6D9J|1|5|C|4924
6D9J|1|5|U|4925
6D9J|1|5|C|4926
6D9J|1|5|G|4927
6D9J|1|5|C|4928
6D9J|1|5|C|4929

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain O

uL13