IL_6DDD_004
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGAG*CUUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6DDD|1|1|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_004 not in the Motif Atlas
- Homologous match to IL_4WF9_004
- Geometric discrepancy: 0.1382
- The information below is about IL_4WF9_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6DDD|1|1|G|81
6DDD|1|1|G|82
6DDD|1|1|G|83
6DDD|1|1|A|84
6DDD|1|1|G|85
*
6DDD|1|1|C|97
6DDD|1|1|U|98
6DDD|1|1|U|99
6DDD|1|1|U|100
6DDD|1|1|G|101
6DDD|1|1|A|102
6DDD|1|1|U|103
6DDD|1|1|C|104
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L24
- Chain K
- 50S ribosomal protein L29
Coloring options: