IL_6DDD_007
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGAACUG*CUUAGUACC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_007 not in the Motif Atlas
- Homologous match to IL_4WF9_008
- Geometric discrepancy: 0.082
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6DDD|1|1|G|190
6DDD|1|1|A|191
6DDD|1|1|G|192
6DDD|1|1|A|193
6DDD|1|1|A|194
6DDD|1|1|C|195
6DDD|1|1|U|196
6DDD|1|1|G|197
*
6DDD|1|1|C|204
6DDD|1|1|U|205
6DDD|1|1|U|206
6DDD|1|1|A|207
6DDD|1|1|G|208
6DDD|1|1|U|209
6DDD|1|1|A|210
6DDD|1|1|C|211
6DDD|1|1|C|212
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain J
- 50S ribosomal protein L28
- Chain P
- 50S ribosomal protein L34
- Chain Q
- 50S ribosomal protein L35
- Chain X
- 50S ribosomal protein L15
Coloring options: