IL_6DDD_046

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAU*GAAAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_046 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3569

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_10484.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6DDD|1|1|U|1448
6DDD|1|1|A|1449
6DDD|1|1|A|1450
6DDD|1|1|U|1451
*
6DDD|1|1|G|1631
6DDD|1|1|A|1632
6DDD|1|1|A|1633
6DDD|1|1|A|1634
6DDD|1|1|A|1635

Current chains

Chain 1

23S rRNA

Nearby chains