IL_6DDD_048

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_048 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2498

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6DDD|1|1|C|1461
6DDD|1|1|G|1462
6DDD|1|1|A|1463
6DDD|1|1|U|1464
6DDD|1|1|G|1465
*
6DDD|1|1|C|1624
6DDD|1|1|U|1625
6DDD|1|1|A|1626
6DDD|1|1|G|1627

Current chains

Chain 1

23S rRNA

Nearby chains