IL_6DDD_052

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAGG*CUGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_052 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3935

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6DDD|1|1|G|1518
6DDD|1|1|U|1519
6DDD|1|1|A|1520
6DDD|1|1|A|1521
6DDD|1|1|G|1522
6DDD|1|1|G|1523
*
6DDD|1|1|C|1557
6DDD|1|1|U|1558
6DDD|1|1|G|1559
6DDD|1|1|A|1560
6DDD|1|1|G|1561
6DDD|1|1|C|1562

Current chains

Chain 1

23S rRNA

Nearby chains