IL_6DDD_058

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGGG*CCCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_058 not in the Motif Atlas

Homologous match to IL_4WF9_123

Geometric discrepancy: 0.4506

The information below is about IL_4WF9_123

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_61988.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6DDD|1|1|U|1757
6DDD|1|1|A|1758
6DDD|1|1|G|1759
6DDD|1|1|G|1760
6DDD|1|1|G|1761
*
6DDD|1|1|C|1768
6DDD|1|1|C|1769
6DDD|1|1|C|1770
6DDD|1|1|A|1771
6DDD|1|1|G|1772

Current chains

Chain 1

23S rRNA

Nearby chains