IL_6DDD_064

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_064 not in the Motif Atlas

Geometric match to IL_4V9F_057

Geometric discrepancy: 0.3807

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6DDD|1|1|G|1877
6DDD|1|1|U|1878
6DDD|1|1|U|1879
6DDD|1|1|A|1880
6DDD|1|1|A|1881
6DDD|1|1|G|1882
*
6DDD|1|1|C|1914
6DDD|1|1|G|1915
6DDD|1|1|A|1916
6DDD|1|1|A|1917
6DDD|1|1|G|1918
6DDD|1|1|C|1919

Current chains

Chain 1

23S rRNA

Nearby chains