IL_6DDD_076
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_076 not in the Motif Atlas
- Homologous match to IL_7RQB_088
- Geometric discrepancy: 0.2531
- The information below is about IL_7RQB_088
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6DDD|1|1|C|2324
6DDD|1|1|A|2325
6DDD|1|1|G|2326
*
6DDD|1|1|C|2344
6DDD|1|1|A|2345
6DDD|1|1|U|2346
6DDD|1|1|A|2347
6DDD|1|1|G|2348
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain I
- 50S ribosomal protein L27
- Chain a
- 50S ribosomal protein L18
Coloring options: