IL_6DDD_086

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6DDD|1|1|A|2599, 6DDD|1|1|C|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_086 not in the Motif Atlas

Homologous match to IL_4WF9_096

Geometric discrepancy: 0.092

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6DDD|1|1|C|2539
6DDD|1|1|A|2540
*
6DDD|1|1|U|2598
6DDD|1|1|A|2599
6DDD|1|1|C|2600
6DDD|1|1|G|2601

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain V

50S ribosomal protein L13