IL_6DDD_089
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6DDD|1|1|G|2807
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_089 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0925
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6DDD|1|1|U|2663
6DDD|1|1|U|2664
6DDD|1|1|G|2665
6DDD|1|1|A|2666
6DDD|1|1|G|2667
*
6DDD|1|1|C|2801
6DDD|1|1|A|2802
6DDD|1|1|A|2803
6DDD|1|1|G|2804
6DDD|1|1|A|2805
6DDD|1|1|U|2806
6DDD|1|1|G|2807
6DDD|1|1|A|2808
6DDD|1|1|G|2809
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L13
Coloring options: