3D structure

PDB id
6DDD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUAC*GGUAG
Length
10 nucleotides
Bulged bases
6DDD|1|1|U|2716, 6DDD|1|1|A|2717
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6DDD_092 not in the Motif Atlas
Homologous match to IL_4WF9_102
Geometric discrepancy: 0.077
The information below is about IL_4WF9_102
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

6DDD|1|1|U|2714
6DDD|1|1|G|2715
6DDD|1|1|U|2716
6DDD|1|1|A|2717
6DDD|1|1|C|2718
*
6DDD|1|1|G|2745
6DDD|1|1|G|2746
6DDD|1|1|U|2747
6DDD|1|1|A|2748
6DDD|1|1|G|2749

Current chains

Chain 1
23S rRNA

Nearby chains

Chain A
50S ribosomal protein L19
Chain L
50S ribosomal protein L3
Chain Z
50S ribosomal protein L17

Coloring options:


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