IL_6DDD_097

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_097 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.0895

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

6DDD|1|1|U|2867
6DDD|1|1|G|2868
6DDD|1|1|G|2869
6DDD|1|1|A|2870
6DDD|1|1|A|2871
6DDD|1|1|G|2872
*
6DDD|1|1|U|2885
6DDD|1|1|G|2886
6DDD|1|1|G|2887
6DDD|1|1|A|2888
6DDD|1|1|G|2889

Current chains

Chain 1

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L19

Chain Z

50S ribosomal protein L17