IL_6DDG_009

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

6DDG|1|1|G|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_009 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.3014

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6DDG|1|1|A|305
6DDG|1|1|C|306
*
6DDG|1|1|G|409
6DDG|1|1|G|410
6DDG|1|1|A|411
6DDG|1|1|U|412

Current chains

Chain 1

23S rRNA

Nearby chains