IL_6DDG_017
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6DDG|1|1|G|846, 6DDG|1|1|G|850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDG_017 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.0917
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6DDG|1|1|G|719
6DDG|1|1|A|720
6DDG|1|1|A|721
6DDG|1|1|A|722
6DDG|1|1|C|723
*
6DDG|1|1|G|844
6DDG|1|1|A|845
6DDG|1|1|G|846
6DDG|1|1|A|847
6DDG|1|1|U|848
6DDG|1|1|A|849
6DDG|1|1|G|850
6DDG|1|1|C|851
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain S
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L15
Coloring options: