IL_6DDG_033
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCCCAAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDG_033 not in the Motif Atlas
- Geometric match to IL_5J7L_278
- Geometric discrepancy: 0.0816
- The information below is about IL_5J7L_278
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6DDG|1|1|U|1048
6DDG|1|1|C|1049
6DDG|1|1|C|1050
6DDG|1|1|C|1051
6DDG|1|1|A|1052
6DDG|1|1|A|1053
6DDG|1|1|A|1054
6DDG|1|1|A|1055
*
6DDG|1|1|U|1194
6DDG|1|1|A|1195
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L13
Coloring options: