IL_6DDG_036
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6DDG|1|1|A|1171, 6DDG|1|1|U|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDG_036 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1053
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6DDG|1|1|G|1068
6DDG|1|1|G|1069
6DDG|1|1|A|1070
6DDG|1|1|A|1071
6DDG|1|1|A|1072
6DDG|1|1|A|1073
6DDG|1|1|G|1074
*
6DDG|1|1|C|1168
6DDG|1|1|G|1169
6DDG|1|1|A|1170
6DDG|1|1|A|1171
6DDG|1|1|A|1172
6DDG|1|1|A|1173
6DDG|1|1|U|1174
6DDG|1|1|G|1175
6DDG|1|1|U|1176
6DDG|1|1|A|1177
6DDG|1|1|C|1178
6DDG|1|1|C|1179
6DDG|1|1|G|1180
6DDG|1|1|G|1181
6DDG|1|1|G|1182
6DDG|1|1|G|1183
6DDG|1|1|C|1184
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L36
- Chain V
- 50S ribosomal protein L13
- Chain Y
- 50S ribosomal protein L16
Coloring options: