IL_6DDG_041
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6DDG|1|1|U|1249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDG_041 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.0903
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
6DDG|1|1|C|1246
6DDG|1|1|G|1247
6DDG|1|1|U|1248
6DDG|1|1|U|1249
6DDG|1|1|G|1250
6DDG|1|1|A|1251
6DDG|1|1|A|1252
6DDG|1|1|G|1253
*
6DDG|1|1|U|1272
6DDG|1|1|G|1273
6DDG|1|1|G|1274
6DDG|1|1|A|1275
6DDG|1|1|G|1276
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
Coloring options: