IL_6DDG_046

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_046 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.1508

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6DDG|1|1|U|1394
6DDG|1|1|G|1395
6DDG|1|1|A|1396
6DDG|1|1|G|1397
6DDG|1|1|G|1398
*
6DDG|1|1|C|1407
6DDG|1|1|G|1408
6DDG|1|1|U|1409
6DDG|1|1|A|1410
6DDG|1|1|G|1411

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain J

50S ribosomal protein L28

Chain P

50S ribosomal protein L34