IL_6DDG_089

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_089 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1288

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6DDG|1|1|U|2679
6DDG|1|1|U|2680
6DDG|1|1|A|2681
6DDG|1|1|G|2682
6DDG|1|1|U|2683
6DDG|1|1|A|2684
6DDG|1|1|C|2685
*
6DDG|1|1|G|2690
6DDG|1|1|G|2691
6DDG|1|1|A|2692
6DDG|1|1|C|2693
6DDG|1|1|C|2694
6DDG|1|1|G|2695

Current chains

Chain 1

23S rRNA

Nearby chains