IL_6DDG_106
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDG_106 not in the Motif Atlas
- Homologous match to IL_5J7L_386
- Geometric discrepancy: 0.0795
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
6DDG|1|1|G|1710
6DDG|1|1|G|1711
6DDG|1|1|A|1712
6DDG|1|1|A|1713
6DDG|1|1|C|1714
6DDG|1|1|U|1715
6DDG|1|1|C|1716
6DDG|1|1|G|1717
6DDG|1|1|G|1718
*
6DDG|1|1|C|2017
6DDG|1|1|U|2018
6DDG|1|1|G|2019
6DDG|1|1|U|2020
6DDG|1|1|C|2021
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain W
- 50S ribosomal protein L14
Coloring options: