IL_6DDG_108

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

6DDG|1|2|A|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_108 not in the Motif Atlas

Homologous match to IL_8OI5_136

Geometric discrepancy: 0.5253

The information below is about IL_8OI5_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

6DDG|1|2|C|28
6DDG|1|2|C|29
*
6DDG|1|2|G|49
6DDG|1|2|A|50
6DDG|1|2|A|51
6DDG|1|2|G|52

Current chains

Chain 2

5S rRNA

Nearby chains

Chain a

50S ribosomal protein L18