IL_6DNC_018

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

6DNC|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_018 not in the Motif Atlas

Homologous match to IL_5J7L_019

Geometric discrepancy: 0.119

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6DNC|1|A|U|375
6DNC|1|A|G|376
*
6DNC|1|A|U|387
6DNC|1|A|G|388
6DNC|1|A|A|389

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S16

Chain GB

30S ribosomal protein S20