IL_6DNC_026

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_026 not in the Motif Atlas

Homologous match to IL_5J7L_027

Geometric discrepancy: 0.117

The information below is about IL_5J7L_027

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6DNC|1|A|C|580
6DNC|1|A|G|581
6DNC|1|A|C|582
6DNC|1|A|A|583
6DNC|1|A|G|584
*
6DNC|1|A|U|757
6DNC|1|A|C|758
6DNC|1|A|A|759
6DNC|1|A|G|760
6DNC|1|A|G|761

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S15

Chain DB

30S ribosomal protein S17

Chain UA

30S ribosomal protein S8

Chain YA

30S ribosomal protein S12