IL_6DNC_038

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6DNC|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_038 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2763

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6DNC|1|A|G|922
6DNC|1|A|A|923
6DNC|1|A|C|924
*
6DNC|1|A|G|1392
6DNC|1|A|U|1393
6DNC|1|A|A|1394
6DNC|1|A|C|1395

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain RA

30S ribosomal protein S5