IL_6DNC_039

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6DNC|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_039 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.1458

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6DNC|1|A|G|925
6DNC|1|A|G|926
6DNC|1|A|G|927
*
6DNC|1|A|U|1390
6DNC|1|A|U|1391

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain KA

mRNA