IL_6DNC_048
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 6DNC|1|A|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_048 not in the Motif Atlas
- Homologous match to IL_4LFB_046
- Geometric discrepancy: 0.269
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
6DNC|1|A|U|1060
6DNC|1|A|G|1061
*
6DNC|1|A|C|1195
6DNC|1|A|A|1196
6DNC|1|A|A|1197
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain AB
- 30S ribosomal protein S14
- Chain KA
- mRNA
- Chain MA
- Peptide chain release factor 1
- Chain PA
- 30S ribosomal protein S3
- Chain RA
- 30S ribosomal protein S5
- Chain WA
- 30S ribosomal protein S10
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