IL_6DNC_051

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_051 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2329

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6DNC|1|A|C|1129
6DNC|1|A|A|1130
6DNC|1|A|G|1131
6DNC|1|A|C|1132
*
6DNC|1|A|G|1142
6DNC|1|A|G|1143

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain VA

30S ribosomal protein S9

Chain WA

30S ribosomal protein S10