IL_6DNC_060
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 6DNC|1|A|A|1492, 6DNC|1|A|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_060 not in the Motif Atlas
- Geometric match to IL_2O3X_003
- Geometric discrepancy: 0.1942
- The information below is about IL_2O3X_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6DNC|1|A|C|1407
6DNC|1|A|A|1408
6DNC|1|A|C|1409
*
6DNC|1|A|G|1491
6DNC|1|A|A|1492
6DNC|1|A|A|1493
6DNC|1|A|G|1494
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain KA
- mRNA
- Chain MA
- Peptide chain release factor 1
- Chain YA
- 30S ribosomal protein S12
Coloring options: