IL_6DNC_069
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 6DNC|1|B|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_069 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.2147
- The information below is about IL_5J7L_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6DNC|1|B|G|81
6DNC|1|B|U|82
6DNC|1|B|A|83
6DNC|1|B|A|84
6DNC|1|B|G|85
*
6DNC|1|B|C|97
6DNC|1|B|G|98
6DNC|1|B|U|99
6DNC|1|B|U|100
6DNC|1|B|A|101
6DNC|1|B|U|102
6DNC|1|B|A|103
6DNC|1|B|A|104
6DNC|1|B|C|105
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain CA
- 50S ribosomal protein L29
- Chain Y
- 50S ribosomal protein L24
Coloring options: