IL_6DNC_073

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_073 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.2082

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6DNC|1|B|C|269
6DNC|1|B|A|270
6DNC|1|B|G|271
*
6DNC|1|B|C|366
6DNC|1|B|G|367
6DNC|1|B|A|368
6DNC|1|B|U|369
6DNC|1|B|G|370

Current chains

Chain B

23S ribosomal RNA

Nearby chains