IL_6DNC_076
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 6DNC|1|B|A|504, 6DNC|1|B|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_076 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.116
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6DNC|1|B|G|481
6DNC|1|B|A|482
6DNC|1|B|A|483
6DNC|1|B|C|484
*
6DNC|1|B|G|496
6DNC|1|B|A|497
6DNC|1|B|G|498
6DNC|1|B|U|499
6DNC|1|B|G|500
6DNC|1|B|A|501
6DNC|1|B|A|502
6DNC|1|B|A|503
6DNC|1|B|A|504
6DNC|1|B|A|505
6DNC|1|B|G|506
6DNC|1|B|A|507
6DNC|1|B|A|508
6DNC|1|B|C|509
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L22
- Chain Y
- 50S ribosomal protein L24
Coloring options: