IL_6DNC_080

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_080 not in the Motif Atlas

Homologous match to IL_5J7L_259

Geometric discrepancy: 0.1051

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6DNC|1|B|C|672
6DNC|1|B|C|673
6DNC|1|B|G|674
*
6DNC|1|B|C|806
6DNC|1|B|U|807
6DNC|1|B|G|808

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L4

Chain P

50S ribosomal protein L15