IL_6DNC_084

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_084 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.1349

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6DNC|1|B|U|703
6DNC|1|B|G|704
6DNC|1|B|A|705
6DNC|1|B|A|706
6DNC|1|B|G|707
*
6DNC|1|B|U|724
6DNC|1|B|G|725
6DNC|1|B|G|726
6DNC|1|B|A|727
6DNC|1|B|G|728

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L2