IL_6DNC_086

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6DNC|1|B|G|776, 6DNC|1|B|A|788, 6DNC|1|B|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_086 not in the Motif Atlas

Geometric match to IL_4V9F_030

Geometric discrepancy: 0.145

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6DNC|1|B|G|775
6DNC|1|B|G|776
6DNC|1|B|G|777
*
6DNC|1|B|C|787
6DNC|1|B|A|788
6DNC|1|B|A|789
6DNC|1|B|U|790
6DNC|1|B|C|791

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L2

Chain H

50S ribosomal protein L4

Chain HA

50S ribosomal protein L34

Chain W

50S ribosomal protein L22