IL_6DNC_101
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_101 not in the Motif Atlas
- Homologous match to IL_7RQB_039
- Geometric discrepancy: 0.1914
- The information below is about IL_7RQB_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.3
- Basepair signature
- cWW-cSH-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
6DNC|1|B|U|1018
6DNC|1|B|U|1019
6DNC|1|B|A|1020
6DNC|1|B|A|1021
6DNC|1|B|G|1022
6DNC|1|B|U|1023
6DNC|1|B|G|1024
*
6DNC|1|B|C|1140
6DNC|1|B|U|1141
6DNC|1|B|A|1142
6DNC|1|B|A|1143
6DNC|1|B|A|1144
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L6
- Chain JA
- 50S ribosomal protein L36
- Chain N
- 50S ribosomal protein L13
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