IL_6DNC_103

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6DNC|1|B|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_103 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1564

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6DNC|1|B|G|1031
6DNC|1|B|A|1032
6DNC|1|B|U|1033
6DNC|1|B|G|1034
*
6DNC|1|B|C|1121
6DNC|1|B|G|1122
6DNC|1|B|C|1123

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain JA

50S ribosomal protein L36

Chain Q

50S ribosomal protein L16